UCSDBioLit Source Code Rss Feed

Source code checked in, #79962

Project Collection Service Accounts — Mon, 01 Oct 2012 21:14:48 GMT

Upgrade: New Version of LabDefaultTemplate.xaml. To upgrade your build definitions, please visit the following link: http://go.microsoft.com/fwlink/?LinkId=254563

Source code checked in, #79961

Project Collection Service Accounts — Mon, 01 Oct 2012 21:08:39 GMT

Checked in by server upgrade

Source code checked in, #72535

MadhusudhanGS — Mon, 19 Dec 2011 12:05:51 GMT

A fix to annotation issue which stores the anotations information ( URL and other information) in an un encoded format as a part of CustomXml.

Source code checked in, #72247

MadhusudhanGS — Mon, 12 Dec 2011 04:42:57 GMT

Fix which sets the ontology term ContentContorl's placeholder text property to correponding Ontology term URL

Source code checked in, #70624

abhisheks — Wed, 19 Oct 2011 11:29:27 GMT

Source code checked in, #63525

erteam — Tue, 05 Apr 2011 21:39:19 GMT

Update to fix problem with changes in ontology download format.

Source code checked in, #52406

_TFSSERVICE — Tue, 20 Jul 2010 20:45:25 GMT

Checked in by server upgrade

Patch Uploaded: #6024

sjegen — Fri, 28 May 2010 12:32:08 GMT

sjegen has uploaded a patch.

Description:
(Please ignore the posting above. My browser seems to have gotten confused somehow...)

Changed files:

ThisAddIn.cs

OntologyParsing.cs (bigger changes)

ApplicationEvents_Handlers.cs

BioLitTaskPane.cs (bigger changes)

BioLitTaskPane.Designer.cs

Changes:

- Added naive synonym support (synonyms are added to the search dictionary and mapped to their corresponding nodes in the ontology)

- Added support for multiple parents in an ontology (each node will be shown in the search tree multiple times with one tree to the root for each parent)

- Added "fuzzy" search capabilities (search for first part of string if no exact match has been found. Because all the synonyms will be searched and their corresponding nodes displayed I advise caution while searching for very short strings for performance reasons. I tested it using several ontologies with a total of around 200 000 synonyms/names and it worked ok though.)

- Search browser is now able to display the descriptions of the search results and their parents

- Added SmartTag rechecking after opening a document with "Office Button" -> "Open".

I updated the patch to work with the new Beta where possible and added actual .patch-files to the patch archive. My naive approach to synonym recognition still seems to work with the second Beta. If you have any questions regarding the patch please don't hesitate to ask me.

Patch Uploaded: #6023

sjegen — Fri, 28 May 2010 12:25:53 GMT

sjegen has uploaded a patch.

Description:
Changed files:

ThisAddIn.cs

OntologyParsing.cs (bigger changes)

ApplicationEvents_Handlers.cs

BioLitTaskPane.cs (bigger changes)

BioLitTaskPane.Designer.cs

Changes:

- Added naive synonym support (synonyms are added to the search dictionary and mapped to their corresponding nodes in the ontology)

- Added support for multiple parents in an ontology (each node will be shown in the search tree multiple times with one tree to the root for each parent)

- Added "fuzzy" search capabilities (search for first part of string if no exact match has been found. Because all the synonyms will be searched and their corresponding nodes displayed I advise caution while searching for very short strings for performance reasons. I tested it using several ontologies with a total of around 200 000 synonyms/names and it worked ok though.)

- Search browser is now able to display the descriptions of the search results and their parents

- Added SmartTag rechecking after opening a document with "Office Button" -> "Open".

I updated the changes to make them compatible to the second Beta where possible and added actual .patch-files to the patch-archive. My naive approach to synonym recognition still seems to work with the new Beta. If there are any questions, please don't hesitate to ask me.

Source code checked in, #47987

erteam — Fri, 07 May 2010 19:43:18 GMT

Source code checked in, #47986

erteam — Fri, 07 May 2010 19:35:46 GMT

Source code checked in, #47984

erteam — Fri, 07 May 2010 19:26:47 GMT

Source code checked in, #47982

erteam — Fri, 07 May 2010 19:24:00 GMT

Technology Preview, Beta 2 - May 2010

Patch Uploaded: #5767

sjegen — Thu, 15 Apr 2010 07:28:31 GMT

sjegen has uploaded a patch.

Description:
Changed files:

ThisAddIn.cs

SettingsDialog.xaml.cs

OntologyParsing.cs (bigger changes)

CacheManager.cs

ApplicationEvents_Handlers.cs

BioLitTaskPane.cs (bigger changes)

BioLitRibbon.cs

BioLitTaskPane.Designer.cs

Changes:

- Refactoring of file parsing

- (Light) refactoring of cashed/non-cashed file loading/creating

- Added some exception handling (exception handling for debugging purposes is commented out)

- Added naive synonym support (synonyms are added to the search dictionary and mapped to their corresponding nodes in the ontology)

- Added support for multiple parents in an ontology (each node will be shown in the search tree multiple times with one tree to the root for each parent)

- Added "fuzzy" search capabilities (search for first part of string if no exact match has been found. Because all the synonyms will be searched and their corresponding nodes displayed I advise caution while searching for very short strings for performance reasons. I tested it using several ontologies with a total of around 200 000 synonyms/names and it worked ok though.)

- Search browser is now able to display the descriptions of the search results and their parents

- Added more consistent SmartTag adding and checking (the ontology terms are added to the SmartTags after parsing a new OBO-file. Doc
uments are (re)checked after closing the "Ontologies" settings dialog by clicking the "OK" button or after opening a document with "Office Button" -> "Open".)

Known Issues:

- Add-in still seems to get set to inactive randomly. Opening a word file with a double click may be a potential cause. Someone should investigate, I suppose...

I hope I haven't broken anything (or forgotten to attach a changed file) and would appreciate it, if you found the time to review the code changes I made. It was quite a learning experience for me so I would love to get some feedback if it isn't too much of a hassle... :-)...
I can provide a compiled installer too if need should be.

Source code checked in, #36614

onaim — Thu, 10 Dec 2009 20:35:19 GMT

Technology Preview, Beta 1 - December 2009

Source code checked in, #17327

jlfink — Fri, 13 Mar 2009 02:40:07 GMT

Updated User's Guide screenshots, small details

Source code checked in, #16755

pablofe — Wed, 11 Mar 2009 00:54:22 GMT

Dialog layout cleanup

Source code checked in, #16754

pablofe — Wed, 11 Mar 2009 00:46:43 GMT

Updating the list of selected ontologies when items are removed

Source code checked in, #16742

pablofe — Tue, 10 Mar 2009 22:42:01 GMT

Added support for Always On setting

Source code checked in, #16720

pablofe — Tue, 10 Mar 2009 20:04:46 GMT

Improved the display of the list of available ontologies